track HiFi_DNA
type bam
bigDataUrl sorted_PMS_hifi.bam
shortLabel HiFi DNA
longLabel HiFi DNA
visibility dense
color 70,0,185
priority 2
group DNA-seq

track hifi_DNA_density
type bigWig
bigDataUrl sorted_PMS_hifi.bw
shortLabel HiFi DNA dens
longLabel HiFi DNA density
visibility full
color 70,0,185
priority 1
group DNA-seq
height 64

track Illumina_exome
type bam
bigDataUrl sorted_PMS_illumina.bam
shortLabel Illumina exome
longLabel Illumina exome
visibility dense
color 70,0,185
priority 1
group DNA-seq

track Illumina_exome_density
type bigWig
bigDataUrl sorted_PMS_illumina.bw
shortLabel Illumina exome dens
longLabel Illumina exome density
visibility full
color 70,0,185
priority 1
group DNA-seq
height 64

track Illumina_RNA
type bam
bigDataUrl sorted_PMS_hisat2.bam
shortLabel Illumina RNA
longLabel Illumina RNA
visibility dense
color 215,0,40
priority 2
group RNA-seq

track Illumina_RNA_density
type bigWig
bigDataUrl sorted_PMS_hisat2.bw
shortLabel Illumina RNA dens
longLabel Illumina RNA density
visibility full
color 215,0,40
priority 1
group RNA-seq
height 64

track Trancriptome
type bigBed
bigDataUrl PMS_rnaspades.bb
shortLabel Transcriptome
longLabel RNASPades transcriptome
visibility squish
color 215,0,40
priority 1
group RNA-seq

track Protein_coding_genes
type bigBed
bigDataUrl PMS_braker.bb
shortLabel BRAKER3 PCG
longLabel BRAKER3 protein-coding genes
visibility squish
color 50,155,50
priority 1
group Annotation

track Repeats
type bigBed
bigDataUrl PMS_repeatmasker.bb
shortLabel Repeats
longLabel RepeatModeler repeats
visibility squish
color 50,155,50
priority 2
group Annotation

track Large_variants
type vcfTabix
bigDataUrl sorted_PMS.var.vcf.gz
shortLabel Variants
longLabel PBSV-called variants
visibility squish
color 255,165,0
priority 1
group Variation
hapClusterEnabled true